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Volume 39, Issue 1, 1 January 2011
Survey and Summary
Natural and engineered nicking endonucleases—from cleavage mechanism to engineering of strand-specificity
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Pages 1–18, https://doi.org/10.1093/nar/gkq742
Computational Biology
Efficient use of accessibility in microRNA _target prediction
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Pages 19–29, https://doi.org/10.1093/nar/gkq768
M-ORBIS: Mapping of mOleculaR Binding sItes and Surfaces
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Pages 30–43, https://doi.org/10.1093/nar/gkq736
Identification of rare DNA variants in mitochondrial disorders with improved array-based sequencing
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Pages 44–58, https://doi.org/10.1093/nar/gkq750
Gene Regulation, Chromatin and Epigenetics
Highly redundant function of multiple AT-rich sequences as core promoter elements in the TATA-less RPS5 promoter of Saccharomyces cerevisiae
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Pages 59–75, https://doi.org/10.1093/nar/gkq741
MEF/ELF4 transactivation by E2F1 is inhibited by p53
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Pages 76–88, https://doi.org/10.1093/nar/gkq762
An insulator embedded in the chicken α-globin locus regulates chromatin domain configuration and differential gene expression
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Pages 89–103, https://doi.org/10.1093/nar/gkq740
Identification of preferential _target sites for human DNA methyltransferases
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Pages 104–118, https://doi.org/10.1093/nar/gkq774
Reverse crosstalk of TGFβ and PPARβ/δ signaling identified by transcriptional profiling
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Pages 119–131, https://doi.org/10.1093/nar/gkq773
Genome Integrity, Repair and Replication
The splicing-factor related protein SFPQ/PSF interacts with RAD51D and is necessary for homology-directed repair and sister chromatid cohesion
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Pages 132–145, https://doi.org/10.1093/nar/gkq738
BRCC36A is epistatic to BRCA1 in DNA crosslink repair and homologous recombination in Arabidopsis thaliana
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Pages 146–154, https://doi.org/10.1093/nar/gkq722
Visualizing RAD51-mediated joint molecules: implications for recombination mechanism and the effect of sequence heterology
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Pages 155–167, https://doi.org/10.1093/nar/gkq766
Coupling of transcription and replication machineries in λ DNA replication initiation: evidence for direct interaction of Escherichia coli RNA polymerase and the λO protein
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Pages 168–177, https://doi.org/10.1093/nar/gkq752
Genomics
Human single-nucleotide polymorphisms alter p53 sequence-specific binding at gene regulatory elements
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Pages 178–189, https://doi.org/10.1093/nar/gkq764
Genome-wide mapping of RNA Pol-II promoter usage in mouse tissues by ChIP-seq
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Pages 190–201, https://doi.org/10.1093/nar/gkq775
Molecular Biology
Crucial contribution of the multiple copies of the initiator tRNA genes in the fidelity of tRNA fMet selection on the ribosomal P-site in Escherichia coli
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Pages 202–212, https://doi.org/10.1093/nar/gkq760
The cyclin-dependent kinase inhibitor p21 is regulated by RNA-binding protein PCBP4 via mRNA stability
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Pages 213–224, https://doi.org/10.1093/nar/gkq778
Allotopic expression of mitochondrial-encoded genes in mammals: achieved goal, undemonstrated mechanism or impossible task?
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Pages 225–234, https://doi.org/10.1093/nar/gkq769
Nucleic Acid Enzymes
Modular pathways for editing non-cognate amino acids by human cytoplasmic leucyl-tRNA synthetase
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Pages 235–247, https://doi.org/10.1093/nar/gkq763
RNA
Essential structural requirements for specific recognition of HIV TAR RNA by peptide mimetics of Tat protein
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Pages 248–256, https://doi.org/10.1093/nar/gkq713
Structural basis of microRNA length variety
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Pages 257–268, https://doi.org/10.1093/nar/gkq727
Improved deoxyribozymes for synthesis of covalently branched DNA and RNA
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Pages 269–279, https://doi.org/10.1093/nar/gkq753
Analysis of two human pre-ribosomal factors, bystin and hTsr1, highlights differences in evolution of ribosome biogenesis between yeast and mammals
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Pages 280–291, https://doi.org/10.1093/nar/gkq734
The ends of a large RNA molecule are necessarily close
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Pages 292–299, https://doi.org/10.1093/nar/gkq642
The many paths to frameshifting: kinetic modelling and analysis of the effects of different elongation steps on programmed –1 ribosomal frameshifting
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Pages 300–312, https://doi.org/10.1093/nar/gkq761
Structural Biology
Structure and function of the Rad9-binding region of the DNA-damage checkpoint adaptor TopBP1
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Pages 313–324, https://doi.org/10.1093/nar/gkq743
The phosphate clamp: a small and independent motif for nucleic acid backbone recognition
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Pages 325–336, https://doi.org/10.1093/nar/gkq723
Structural insights into cis element recognition of non-polyadenylated RNAs by the Nab3-RRM
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Pages 337–346, https://doi.org/10.1093/nar/gkq751
Characterization of SMG-9, an essential component of the nonsense-mediated mRNA decay SMG1C complex
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Pages 347–358, https://doi.org/10.1093/nar/gkq749
Synthetic Biology and Chemistry
TAL nucleases (TALNs): hybrid proteins composed of TAL effectors and FokI DNA-cleavage domain
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Pages 359–372, https://doi.org/10.1093/nar/gkq704
Position-dependent effects on stability in tricyclo-DNA modified oligonucleotide duplexes
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Pages 373–380, https://doi.org/10.1093/nar/gkq733
Zinc finger protein-dependent and -independent contributions to the in vivo off-_target activity of zinc finger nucleases
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Pages 381–392, https://doi.org/10.1093/nar/gkq787
Methods Online
Strict control of transgene expression in a mouse model for sensitive biological applications based on RMCE compatible ES cells
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Page e1, https://doi.org/10.1093/nar/gkq868
Ice -COLD-PCR enables rapid amplification and robust enrichment for low-abundance unknown DNA mutations
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Page e2, https://doi.org/10.1093/nar/gkq899
Visualization of the protein-coding regions with a self adaptive spectral rotation approach
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Page e3, https://doi.org/10.1093/nar/gkq891
Allele dynamics plots for the study of evolutionary dynamics in viral populations
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Page e4, https://doi.org/10.1093/nar/gkq909
MethylViewer: computational analysis and editing for bisulfite sequencing and methyltransferase accessibility protocol for individual templates (MAPit) projects
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Page e5, https://doi.org/10.1093/nar/gkq716
Front-Matter/Back-Matter
Nucleic Acids Research: VOLUME 39 ISSUE 1 2011
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Page i, https://doi.org/10.1093/nar/gkr002
Nucleic Acids Research
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Page ii, https://doi.org/10.1093/nar/gkr001
Subscriptions
Nucleic Acids Research, Volume 39, Issue 1, 1 January 2011, Page iii, https://doi.org/10.1093/nar/gkr003
