{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,10,22]],"date-time":"2024-10-22T18:52:13Z","timestamp":1729623133054,"version":"3.28.0"},"reference-count":42,"publisher":"IEEE","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2016,5]]},"DOI":"10.1109\/ipdpsw.2016.129","type":"proceedings-article","created":{"date-parts":[[2016,8,4]],"date-time":"2016-08-04T20:26:46Z","timestamp":1470342406000},"page":"443-452","source":"Crossref","is-referenced-by-count":0,"title":["A Scalable Pipeline for Transcriptome Profiling Tasks with On-Demand Computing Clouds"],"prefix":"10.1109","author":[{"given":"Shayan","family":"Shams","sequence":"first","affiliation":[]},{"given":"Nayong","family":"Kim","sequence":"additional","affiliation":[]},{"given":"Xiandong","family":"Meng","sequence":"additional","affiliation":[]},{"given":"Ming Tai","family":"Ha","sequence":"additional","affiliation":[]},{"given":"Shantenu","family":"Jha","sequence":"additional","affiliation":[]},{"given":"Zhong","family":"Wang","sequence":"additional","affiliation":[]},{"given":"Joohyun","family":"Kim","sequence":"additional","affiliation":[]}],"member":"263","reference":[{"key":"ref39","doi-asserted-by":"publisher","DOI":"10.1101\/gr.089532.108"},{"key":"ref38","doi-asserted-by":"crossref","first-page":"28s","DOI":"10.1186\/1471-2164-13-S7-S28","article-title":"A de novo next generation genomic sequence assembler based on string graph and mapreduce cloud computing framework","volume":"13","author":"chang","year":"2012","journal-title":"BMC Genomics"},{"key":"ref33","first-page":"1","article-title":"Space-efficient and exact de Bruijn graph representation based on a Bloom filter Algorithms for Molecular Biology","volume":"8","author":"chikhi","year":"2013"},{"key":"ref32","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-642-12683-3_28"},{"key":"ref31","doi-asserted-by":"publisher","DOI":"10.1089\/cmb.2009.0238"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bts094"},{"key":"ref37","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-15-S9-S2"},{"journal-title":"A Comprehensive Perspective on Pilot-Abstraction","year":"2015","author":"turilli","key":"ref36"},{"journal-title":"Radical Pilot","year":"0","key":"ref35"},{"key":"ref34","doi-asserted-by":"publisher","DOI":"10.1007\/s10723-012-9244-1"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1109\/CCGRID.2010.107"},{"year":"0","key":"ref40"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1101\/gr.126599.111"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1186\/2047-217X-2-10"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-15-126"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkv002"},{"key":"ref15","article-title":"A consensus approach to vertebrate de novo transcriptome assembly from RNA-seq data: assembly of the duck (Anas platyrhynchos) transcriptome","volume":"5","author":"joanna","year":"2014","journal-title":"Frontiers in Genetics"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.2174\/157489310794072508"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2010-11-8-r83"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bts023"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2164-16-S6-S3"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-8-64"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0094825"},{"key":"ref27","first-page":"4","article-title":"The vmatch large scale sequence analysis software","author":"kurtz","year":"2003","journal-title":"Ref Type Computer Program"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1038\/nbt.1883"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1004393"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.1101\/gr.074492.107"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2164-11-663"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1145\/1996023.1996027"},{"journal-title":"Radical-Pilot Scalable execution of heterogeneous and dynamic workloads on supercomputers","year":"2015","author":"merzky","key":"ref7"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0132628"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1002\/cpe.3013"},{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1038\/nrg2484"},{"journal-title":"Stormbow a cloud-based tool for reads mapping and expression quantification in large-scale RNA- Seq studies","year":"2013","author":"zhao","key":"ref20"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1109\/TPDS.2012.80"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-11-S12-S1"},{"key":"ref42","doi-asserted-by":"publisher","DOI":"10.1155\/2014\/348725"},{"key":"ref24","article-title":"Contrail: Assembly of large genomes using cloud computing","author":"schatz","year":"2010","journal-title":"CSHL Biology of Genomes Conference"},{"key":"ref41","doi-asserted-by":"crossref","first-page":"553","DOI":"10.1186\/s13059-014-0553-5","article-title":"Evaluation of de novo transcriptome assemblies from RNA- Seq data","volume":"15","author":"bo li","year":"2014","journal-title":"Genome Biology"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1101\/gr.107524.110"},{"year":"0","key":"ref26"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu343"}],"event":{"name":"2016 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW)","start":{"date-parts":[[2016,5,23]]},"location":"Chicago, IL, USA","end":{"date-parts":[[2016,5,27]]}},"container-title":["2016 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW)"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/7518534\/7529833\/07529901.pdf?arnumber=7529901","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,7,4]],"date-time":"2022-07-04T23:54:18Z","timestamp":1656978858000},"score":1,"resource":{"primary":{"URL":"http:\/\/ieeexplore.ieee.org\/document\/7529901\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016,5]]},"references-count":42,"URL":"https:\/\/doi.org\/10.1109\/ipdpsw.2016.129","relation":{},"subject":[],"published":{"date-parts":[[2016,5]]}}}  <script>parent.window.postMessage('ixistenz.url:https://api.crossref.org/works/10.1109%2FIPDPSW.2016.129', '*'); </script> <div id='browserdiffcontainer' style='position: fixed; right: 10px; top: 10vh; min-width: 60px;  border: 1px solid white; background: rgb(251, 189, 0);; opacity: 0.9; font-family: helvetica, arial, sans serif;  font-size: 12px; z-index: 20001; padding-bottom: 20px;'><div onclick="toggle('browserdiffcontainerlist'); return false;" style='background: rgb(151, 89, 0);; color: white; '><strong>&nbsp; <span class='glyphicon glyphicon-minus'></span> NODES</strong></div><div id='browserdiffcontainerlist' style='padding-left: 10px; padding-right: 5px; max-height: 50vh; overflow: auto; '><div><a href='#diffid117' style='color: white;' onClick="parent.window.postMessage('ixistenz.opendiff:117', '*');; return false;" style='text-decoration: none; '>chat </a> <a style='color: white;' href='#diffid117'><sup>1</sup></a></div><div><a href='#diffid123' style='color: white;' onClick="parent.window.postMessage('ixistenz.opendiff:123', '*');; return false;" style='text-decoration: none; '>INTERN </a> <a style='color: white;' href='#diffid123'><sup>2</sup></a></div></div></div>
<script>
function toggle( divname ) {
  var x = document.getElementById( divname );
  if (x.style.display === 'none') {
    x.style.display = 'block';
  } else {
    x.style.display = 'none';
  }
} </script>