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NFCORE_HLATYPING:HLATYPING:SAMTOOLS_COLLATEFASTQ - OutOfMemory?

Status: Open.

#177 In nf-core/hlatyping;

· dansteiert opened on Jan 2, 2025

DictReader seems to not be handling utf-encoding properly

bugSomething isn't workingSomething isn't working

Status: Open.

#154 In nf-core/hlatyping;

· thomasyu888 opened on Apr 22, 2023

 ·  

2.1

No cat_fastq? Sample with multiple run are not handled

enhancementNew feature or requestNew feature or request

Status: Open.

#148 In nf-core/hlatyping;

· praveenraj2018 opened on Nov 10, 2022

adding HLA-VBseq as a new module

enhancementNew feature or requestNew feature or request

Status: Open.

#147 In nf-core/hlatyping;

· chrstphdm opened on Nov 7, 2022

adding HLAscan as a new module

enhancementNew feature or requestNew feature or request

Status: Open.

#146 In nf-core/hlatyping;

· chrstphdm opened on Nov 7, 2022

Evaluate interest of using an algorithm for combining results

enhancementNew feature or requestNew feature or request

Status: Open.

#145 In nf-core/hlatyping;

· chrstphdm opened on Oct 27, 2022

Unclear how to build files for base_index_path

enhancementNew feature or requestNew feature or request

Status: Open.

#111 In nf-core/hlatyping;

· szymonwieloch opened on Mar 3, 2021

 ·  

2.1

Make the pipeline run with different file sizes

enhancementNew feature or requestNew feature or request

Status: Open.

#108 In nf-core/hlatyping;

· szymonwieloch opened on Feb 4, 2021

 ·  

2.1

Provide bwa mem / bwa mem2 mode

enhancementNew feature or requestNew feature or request

Status: Open.

#106 In nf-core/hlatyping;

· apeltzer opened on Feb 3, 2021

 ·  

2.1