The following is a list of unnamed Sacagawea-type shuttlecraft.
San Francisco rescue
Two shuttlecraft of this type, assigned to the USS Voyager, participated in the rescue of the USS Protostar youth from their downed Shuttle 06 in San Francisco Bay in 2384. (PRO: "Supernova, Part 2")
The Doctor's transport
Later that year, a shuttlecraft of this type, also assigned to the Voyager-A, brought The Doctor to Starfleet Academy to pick up the Protostar youth (now aspiring Academy hopefuls,) as part of a mission for Vice Admiral Kathryn Janeway. (PRO: "Into the Breach, Part I")
Combat with the Loom
After the destruction of the Sacagawea, two shuttlecraft of this type were parked in one of the Voyager-A's two shuttlebays.
Vice Admiral Janeway later boarded one of the two shuttles to fend off the Loom, before crashing it onto planet below. (PRO: "The Devourer of All Things, Part II")
Indiana transport
In 2385, a Voyager-A shuttlecraft ferried Vice Admiral Janeway home to Indiana for her early retirement. (PRO: "Ouroboros, Part II")
Not long after, following the Attack on Mars, Captain Chakotay took a Voyager-A shuttlecraft to Janeway's Indiana home to recall her back into Starfleet service. (PRO: "Ouroboros, Part II")
It's possible these two instances used the same shuttlecraft.