Table 1.
The 32 modules and nearby genes which are known to be patterned in the early blastoderm (upper block) and 11 additional modules (lower block) for which a pair is linked to the same gene.
| Rank | Score | Gene | Location |
|---|---|---|---|
| 1 * | 37.82 | hairy (stripe 6) | up/9.2 kb |
| 2 * | 28.29 | knirps | up/1.6 kb |
| 3 * | 27.24 | tailless | up/2.6 kb |
| 5 * | 25.32 | knirps | up/1.1 kb |
| 8 | 20.80 | runt (stripe 7) | up/3.2 kb |
| 9 | 19.89 | optix = six3 | down/11 kb |
| 10 | 19.75 | Dichaete | down/2.3 kb |
| 17 | 18.88 | Tenascin-m | up/110 kb |
| 18 | 18. 87 | giant | down/14.5 kb |
| 20 * | 18.76 | Kruppel | up/4.1 kb |
| 23 | 18.30 | ken | intra |
| 24 | 18.29 | giant (posterior) | up/2.1 kb |
| 25 | 18.29 | hairy (stripe 1) | up/4.7 kb |
| 27 | 18.06 | hairy (stripe 1 or 5) | up/5.4 kb |
| 34 | 17.36 | hairy (stripe 7) | up/10.4 kb |
| 36 * | 17.25 | even skipped (stripe 3+7) | up/3.5 kb |
| 37 | 17.15 | knirps-like | intra |
| 41 * | 17.02 | hairy (stripe 5) | up/6.2 kb |
| 43 | 16.94 | brinker | up/10.9 kb |
| 45 | 16.83 | pipsqueak | intra |
| 46 | 16.82 | teashirt | intra |
| 48 * | 16.80 | short gastrulation | intra |
| 51 | 16.76 | abd-A | up/17 kb |
| 54 | 16.65 | abd-B | up/15.3 kb |
| 61 | 16.20 | vnd | intra |
| 75 | 15.90 | cap n' collar | up/4.3 kb |
| 76 * | 15.89 | even skipped (stripe 2) | up/1.7 kb |
| 91 | 15.69 | runt (stripe 3) | up/9.67 |
| 120 * | 15.34 | tailless (proximal torso) | up/0.64 kb |
| 124 | 15.32 | proboscopedia | intra |
| 126 | 15.29 | runt | up/17.2 kb |
| 129 * | 15.24 | hunchback (central stripe) | up/3.34 kb |
| 6 | 23.97 | Cyp6V1 | down/1.6 kb |
| 11 | 19.66 | CG13595? | down/4.5 kb |
| 14 | 19.32 | Cyp6V1 | up/6 kb |
| 55 | 16.62 | echinoid | up/58 kb |
| 58 | 16.34 | CG2118/Acf1/faf | intra |
| 69 | 16.01 | faf/Acf1/CG2118 | intra |
| 93 | 15.65 | echinoid | intra |
| 105 | 15.51 | bruno 3 | up/95 kb |
| 117 | 15.37 | CG5060 | up/31.1 kb |
| 130 | 15.22 | bruno 3 | up/25.1 kb |
| 132 | 15.18 | CG5060 | up/30.1 kb |
Modules which were used to construct weight matrices are marked with stars. The columns give the rank of each module, the score, the gene, information about the location of the module in respect to the gene (up/downstream or intragenic). For References and additional material see additional File 3.