METAL: fast and efficient meta-analysis of genomewide association scans
- PMID: 20616382
- PMCID: PMC2922887
- DOI: 10.1093/bioinformatics/btq340
METAL: fast and efficient meta-analysis of genomewide association scans
Abstract
Summary: METAL provides a computationally efficient tool for meta-analysis of genome-wide association scans, which is a commonly used approach for improving power complex traits gene mapping studies. METAL provides a rich scripting interface and implements efficient memory management to allow analyses of very large data sets and to support a variety of input file formats.
Availability and implementation: METAL, including source code, documentation, examples, and executables, is available at http://www.sph.umich.edu/csg/abecasis/metal/.
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References
-
- Cochran WG. The combination of estimates from different experiments. Biometrics. 1954;10:101–129.
-
- Devlin B, Roeder K. Genomic control for association studies. Biometrics. 1999;55:997–1004. - PubMed
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