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Review
. 2024 Jul 29:19:7691-7708.
doi: 10.2147/IJN.S459905. eCollection 2024.

Adeno-Associated Virus Engineering and Load Strategy for Tropism Modification, Immune Evasion and Enhanced Transgene Expression

Affiliations
Review

Adeno-Associated Virus Engineering and Load Strategy for Tropism Modification, Immune Evasion and Enhanced Transgene Expression

Xun Zhou et al. Int J Nanomedicine. .

Abstract

Gene therapy aims to add, replace or turn off genes to help treat disease. To date, the US Food and Drug Administration (FDA) has approved 14 gene therapy products. With the increasing interest in gene therapy, feasible gene delivery vectors are necessary for inserting new genes into cells. There are different kinds of gene delivery vectors including viral vectors like lentivirus, adenovirus, retrovirus, adeno-associated virus et al, and non-viral vectors like naked DNA, lipid vectors, polymer nanoparticles, exosomes et al, with viruses being the most commonly used. Among them, the most concerned vector is adeno-associated virus (AAV) because of its safety, natural ability to efficiently deliver gene into cells and sustained transgene expression in multiple tissues. In addition, the AAV genome can be engineered to generate recombinant AAV (rAAV) containing transgene sequences of interest and has been proven to be a safe gene vector. Recently, rAAV vectors have been approved for the treatment of various rare diseases. Despite these approvals, some major limitations of rAAV remain, namely nonspecific tissue _targeting and host immune response. Additional problems include neutralizing antibodies that block transgene delivery, a finite transgene packaging capacity, high viral titer used for per dose and high cost. To deal with these challenges, several techniques have been developed. Based on differences in engineering methods, this review proposes three strategies: gene engineering-based capsid modification (capsid modification), capsid surface tethering through chemical conjugation (surface tethering), and other formulations loaded with AAV (virus load). In addition, the major advantages and limitations encountered in rAAV engineering strategies are summarized.

Keywords: AAV engineering; capsid modification; directed evolution; machine learning; rational design; surface tethering; virus load.

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Conflict of interest statement

The authors report no conflicts of interest in this work.

Figures

Figure 1
Figure 1
General structure of AAVs and rAAV. (A) Wild-type AAV genome. AAV has two open reading frames, including genes necessary for replication (rep) and capsid structure (cap). Rep portion encodes genes for viral genome replication, transcriptional regulation, and virion assembly (Rep78, Rep68, Rep52, Rep40). Cap portion encodes genes for viral capsid proteins (Vp1, Vp2, Vp3). (B) General recombinant AAV (rAAV) genome structure. The rAAV is composed of a promoter, _target transgene and a PolyA tail. Promoter portion can drive expression of the _target transgene. PolyA tail is a polyadenylation signal, which supports RNA nuclear output and translation. All these open reading frames are flanked by ITR, which form T-shaped hairpin ends.
Figure 2
Figure 2
Strategies for engineering AAVs. (A) Capsid modification directly changes the capsid protein of AAV by gene engineering. (B) AAV surface is synthetically tethered with desired substance by binding or compounding with capsid protein. (C) Virus loading is to completely package AAV in a larger natural or synthetic platform material.
Figure 3
Figure 3
Error-prone PCR. The main principle of error-prone PCR is to introduce random mutation into the gene of interest (red, yellow, green lines represent variants of cap gene), and form a plasmid with a mutated cap gene. Subsequently, the transfection of AAV-producing cells led to the production of mutant AAV capsids, and various AAV capsid libraries were formed. Following that, three methods, namely binding affinity columns, in vitro cell culture models and in vivo model were used to select AAV variants.
Figure 4
Figure 4
Gene shuffling. Orange, purple and green lines represent variants of the Cap gene, which then undergoes fragmentation and shuffling of fragments. Subsequently, the transfection of AAV-producing cells led to the generation of new chimeric capsids, forming diverse AAV capsid libraries.
Figure 5
Figure 5
Overview of exosomes-AAV production protocol. 293T cells were transfected with AAV plasmid expression vector encoding _targeting ligand, and then the cells secreted free AAV and exosome-AAV, and it was obtained by ultracentrifugation.

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