Classical Yeast Cell Biology, Early Maps, and Genome Surveys

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Sequencing Consortium Results for each Chromosome

• Goffeau A, Barrell BG, Bussey H, Davis RW, Dujon B, et al. (1996) Life with 6000 genes. Science 274(5287):546, 563-7. PMID:8849441

• Bussey H, Kaback DB, Zhong W, Vo DT, Clark MW, et al. (1995) The nucleotide sequence of chromosome I from Saccharomyces cerevisiae. Proc Natl Acad Sci USA 92(9):3809-13. PMID:7731988

• Feldmann H, Aigle M, Aljinovic G, André B, Baclet MC, et al. (1994) Complete DNA sequence of yeast chromosome II. EMBO J 13(24):5795-809. PMID:7813418

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• Jacq C, Alt-Mörbe J, André B, Arnold W, Bahr A, et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome IV. Nature 387(6632):75-8. PMID:9169867

• Dietrich FS, Mulligan J, Hennessy K, Yelton MA, Allen E, et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome V. Nature 387(6632):78-81. PMID:9169868

• Murakami Y, Naitou M, Hagiwara H, Shibata T, Ozawa M, et al. (1995) Analysis of the nucleotide sequence of chromosome VI from Saccharomyces cerevisiae. Nat Genet 10(3):261-8. PMID:7670463

• Tettelin H, Agostoni Carbone ML, Albermann K, Albers M, Arroyo J, et al. (1997) The nucleotide sequence of Saccharomyces cerevisiaechromosome VII. Nature 387(6632):81-4. PMID:9169869

• Johnston M, Andrews S, Brinkman R, Cooper J, Ding H, et al. (1994) Complete nucleotide sequence of Saccharomyces cerevisiae chromosome VIII. Science 265(5181):2077-82. PMID:8091229

• Churcher C, Bowman S, Badcock K, Bankier A, Brown D, et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome IX. Nature 387(6632):84-7. PMID:9169870

• Galibert F, Alexandraki D, Baur A, Boles E, Chalwatzis N, et al. (1996) Complete nucleotide sequence of Saccharomyces cerevisiae chromosome X. Embo J 15(9):2031-49. PMID:8641269

• Dujon B, Alexandraki D, André B, Ansorge W, Baladron V, et al. (1994) Complete DNA sequence of yeast chromosome XI. Nature 369(6479):371-8. PMID:8196765

• Johnston M, Hillier L, Riles L, Albermann K, André B, et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome XII. Nature 387(6632):87-90. PMID:9169871

• Bowman S, Churcher C, Badcock K, Brown D, Chillingworth T, et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome XIII. Nature 387(6632):90-3. PMID:9169872

• Philippsen P, Kleine K, Pöhlmann R, Düsterhöft A, Hamberg K, et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome XIV and its evolutionary implications. Nature 387(6632):93-8. PMID:9169873

• Dujon B, Albermann K, Aldea M, Alexandraki D, Ansorge W, et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome XV. Nature 387(6632):98-102. PMID:9169874

• Bussey H, Storms RK, Ahmed A, Albermann K, Allen E, et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome XVI. Nature 387(6632):103-5. PMID:9169875

• Foury F, Roganti T, Lecrenier N and Purnelle B. (1998) The complete sequence of the mitrochondrial genome of Saccharomyces cerevisiae. FEBS Lett 440(3):325-31. PMID:9873296

Strains

• Mortimer R and Johnston JR. (1986) Geneology of principal strains of the yeast genetic stock center. Genetics 113(1):35-43. PMID:3519363

• Tawfik OW, Papasian CJ, Dixon AY, et al. (1989) Saccharomyces cerevisiae pneumonia in a patient with acquired immune deficiency syndrome. J Clin Microbiol 27(7):1689-91. PMID:2671026

• Winston F, Dollard C and Ricupero-Hovasse SL. (1995) Construction of a set of convenient Saccharomyces cerevisiae strains that are isogenic to S288C. Yeast 11(1):53-5. PMID:7762301

• Pérez-Ortín JE, Querol A, Puig S, et al. (2002) Molecular characterization of chromosomal rearrangement involved in the adaptive evolution of yeast strains. Genome Res 12(10):1533-9. PMID:12368245

• Sniegowski PD, Dombrowski PG and Fingerman E. (2002) Saccharomyces cerevisiae and Saccharomyces paradoxus coexist in a natural woodland site in North America and display different levels of reproductive isolation from European conspecifics. FEMS Yeast Res 1(4):299-306. PMID:12702333

• Fay JC, McCullough HL, Sniegowski PD, et al. (2004) Population genetic variation in gene expression is associated with phenotypic variation in Saccharomyces cerevisiae. Genome Biol 5(4):R26. PMID:15059259

• Gu Z, David L, Petrov D, et al. (2005) Elevated evolutionary rates in the laboratory strain of Saccharomyces cerevisiae. Proc Natl Acad Sci USA 102(4):1092-7. PMID:15647350

• Ronald J, Tang H and Brem RB. (2006) Genomewide evolutionary rates in laboratory and wild yeast. Genetics 174(1):541-4. PMID:16816417

• Wei W, McCusker JH, Hyman RW, et al. (2007) Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789. (2007) Proc Natl Acad Sci USA 104(31):12825-30. PMID:17652520

• Omura F, Hatanaka H and Nakao Y. (2007) Characterization of a novel tyrosine permease of larger brewing yeast shared by Saccharomyces cerevisiae strain RM11-1a. FEMS Yeast Res 7(8):1350-61. PMID:17825063

• Borneman AR, Forgan AH, Pretorius IS, et al. (2008) Comparative genome analysis of a Saccharomyces cerevisiae wine strain. FEMS Yeast Res 8(7):1185-95. PMID:18778279

• Argueso JL, Carazzolle MF, Mieczkowski PA, et al. (2009) Genome structure of a Saccharomyces cerevisiae strain widely used in bioethanol production. Genome Res 19(12):2258-70. PMID:19812109

• Novo M, Bigey Y, Beyne E, et al. (2009) Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118. Proc Natl Acad Sci USA 106(38):16333-8. PMID:19805302

• Borneman AR, Desany BA, Riches D, et al. (2011) Whole-genome comparison reveals novel genetic elements that characterize the genome of industrial strains of Saccharomyces cerevisiae. PLoS Genet 7(2):e1001287. PMID:21304888

• Akao T, Yashiro I, Hosoyama A, et al. (2011) Whole-genome sequencing of sake yeast Saccharomyces cerevisiae Kyokai no. 7. DNA Res 18(6):423-34. PMID:21900213

• Libkind D, Hittinger CT, Valério E, et al. (2011) Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast. Proc Natl Acad Sci USA 108(35):14539-44. PMID:21873232

• Nguyen HV, Legras JL, Neuvéglise C, et al. (2011) Deciphering the hybridisation history leading to the Lager lineage based on mosaic genomes of Saccharomyces bayanus strains NBRC1948 and CBS380. PLoS One 6(10):e25821. PMID:21998701

• Nijkamp JF, van den Broek M, Datema E, et al. (2012) De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D, a model for modern industrial biotechnology. Microb Cell Fact 11:36. PMID:22448915

• Ralser M, Kuhl H, Ralser M, et al. (2012) The Saccharomyces cerevisiae W303-K6001 cross-platform genome sequence: insights into ancestry and physiology of a laboratory mutt. Open Biol 2(8):120093. PMID:22977733

• Borneman AR, Desany BA, Riches D, et al. (2012) The genome sequence of the wine yeast VIN7 reveals an allotriploid hybrid genome with Saccharomyces cerevisiae and Saccharomyces kudriavzevii origins. FEMS Yeast Res 12(1):88-96. PMID:22136070

• Erny C, Raoult P, Alais A, et al. (2012) Ecological success of a group of Saccharomyces cerevisiae / Saccharomyces kudriavzevii hybrids in the Northern European wine-making environment. Appl Environ Microbiol 78(9):3256-65. PMID:22344648

• Peris D, Lopes CA, Belloch C, et al. (2012) Comparative genomics among Saccharomyces cerevisiae x Saccharomyces kudriavzevii natural hybrid strains isolated from wine and beer reveals different origins. BMC Genomics 13:407. PMID:22906207